OBO Foundry dashboard analysis¶

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/tmp/ipykernel_7890/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

Turtle            38
RDF/XML Syntax    35
unknown            8
OWL/XML Syntax     2
Turtle Syntax      1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 76 2769.809524 10858.297320 0.0 101.50 334.0 1796.00 96738.0
Declaration 76 660.880952 1387.497838 0.0 51.75 249.5 624.75 11135.0
SubClassOf 72 731.119048 2657.867400 0.0 14.00 144.0 599.00 23882.0
ObjectPropertyRange 65 34.750000 63.713189 0.0 4.00 19.5 37.25 520.0
ObjectPropertyDomain 64 32.285714 62.791790 0.0 1.75 18.0 34.75 517.0
DataPropertyRange 57 11.309524 24.117671 0.0 0.00 3.5 10.00 170.0
InverseObjectProperties 54 10.678571 21.508284 0.0 0.00 2.0 8.25 126.0
SubObjectPropertyOf 54 44.297619 93.517060 0.0 0.00 8.5 55.00 709.0
DataPropertyDomain 48 12.761905 35.484468 0.0 0.00 2.0 7.00 235.0
ClassAssertion 47 125.690476 460.651921 0.0 0.00 1.0 20.00 3053.0
DisjointClasses 47 165.023810 1338.836862 0.0 0.00 1.0 11.25 12277.0
EquivalentClasses 41 106.392857 671.468827 0.0 0.00 0.0 27.50 6147.0
SubAnnotationPropertyOf 39 6.952381 14.489635 0.0 0.00 0.0 10.00 85.0
SubDataPropertyOf 35 7.678571 27.866792 0.0 0.00 0.0 5.25 242.0
TransitiveObjectProperty 34 3.392857 7.069394 0.0 0.00 0.0 5.00 38.0
AnnotationPropertyRangeOf 29 2.607143 5.370643 0.0 0.00 0.0 2.00 20.0
FunctionalObjectProperty 26 1.714286 3.612466 0.0 0.00 0.0 1.25 18.0
SymmetricObjectProperty 25 2.535714 6.010927 0.0 0.00 0.0 1.25 35.0
FunctionalDataProperty 25 1.345238 3.903949 0.0 0.00 0.0 1.00 26.0
InverseFunctionalObjectProperty 24 0.940476 2.267376 0.0 0.00 0.0 1.00 12.0
IrrefexiveObjectProperty 21 2.750000 6.543414 0.0 0.00 0.0 0.25 35.0
AsymmetricObjectProperty 18 1.892857 4.794620 0.0 0.00 0.0 0.00 22.0
ObjectPropertyAssertion 17 267.035714 1435.078953 0.0 0.00 0.0 0.00 10267.0
DisjointUnion 17 6.904762 21.107082 0.0 0.00 0.0 0.00 116.0
DataPropertyAssertion 15 92.785714 449.014693 0.0 0.00 0.0 0.00 3617.0
SubPropertyChainOf 14 2.869048 14.751581 0.0 0.00 0.0 0.00 120.0
EquivalentObjectProperties 9 0.880952 4.183746 0.0 0.00 0.0 0.00 36.0
AnnotationPropertyDomain 9 0.238095 0.913342 0.0 0.00 0.0 0.00 6.0
DisjointObjectProperties 8 0.452381 1.786190 0.0 0.00 0.0 0.00 12.0
Rule 8 0.952381 3.636842 0.0 0.00 0.0 0.00 25.0
DifferentIndividuals 6 0.404762 2.751206 0.0 0.00 0.0 0.00 25.0
ReflexiveObjectProperty 6 0.107143 0.439547 0.0 0.00 0.0 0.00 3.0
SameIndividual 2 1.607143 12.985643 0.0 0.00 0.0 0.00 118.0
EquivalentDataProperties 1 0.059524 0.545545 0.0 0.00 0.0 0.00 5.0
DatatypeDefinition 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0
DisjointDataProperties 1 0.023810 0.218218 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 76 2815.928571 9315.374946 0.0 110.5 615.5 2110.25 78469.0
ObjectUnionOf 50 12.678571 20.680100 0.0 0.0 2.0 16.00 88.0
ObjectAllValuesFrom 45 20.440476 51.643437 0.0 0.0 1.5 18.25 400.0
ObjectSomeValuesFrom 43 269.857143 1814.880202 0.0 0.0 1.0 66.00 16614.0
ObjectIntersectionOf 39 96.071429 679.518855 0.0 0.0 0.0 13.50 6217.0
ObjectExactCardinality 32 4.821429 15.164290 0.0 0.0 0.0 3.00 115.0
DataExactCardinality 27 2.190476 4.303196 0.0 0.0 0.0 3.00 18.0
ObjectComplementOf 21 3.392857 19.853692 0.0 0.0 0.0 0.25 179.0
DataSomeValuesFrom 18 1.630952 4.883658 0.0 0.0 0.0 0.00 33.0
DataAllValuesFrom 17 0.654762 1.616884 0.0 0.0 0.0 0.00 9.0
ObjectHasValue 17 7.047619 33.591775 0.0 0.0 0.0 0.00 211.0
DataHasValue 16 19.333333 65.646797 0.0 0.0 0.0 0.00 494.0
ObjectMinCardinality 16 1.250000 3.626791 0.0 0.0 0.0 0.00 19.0
ObjectMaxCardinality 12 11.273810 97.538914 0.0 0.0 0.0 0.00 894.0
ObjectOneOf 10 5.702381 34.890458 0.0 0.0 0.0 0.00 272.0
DataMinCardinality 6 0.214286 1.431752 0.0 0.0 0.0 0.00 13.0
DataMaxCardinality 6 1.190476 6.825671 0.0 0.0 0.0 0.00 59.0
ObjectHasSelf 1 0.011905 0.109109 0.0 0.0 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
42 OBO 0.316 0.549 0.083
57 PROVO 0.311 0.504 0.119
25 FOAF 0.297 0.333 0.262
27 IAO 0.296 0.593 0.000
6 CHAMEO 0.275 0.549 0.000
15 EMMO 0.275 0.549 0.000
20 EMMO_crystallography 0.275 0.549 0.000
59 QUDT 0.275 0.549 0.000
77 nfdicore 0.275 0.549 0.000
54 PMDCO 0.275 0.549 0.000
18 EMMO_Datamodel 0.252 0.504 0.000
2 BWMD-DOMAIN 0.252 0.504 0.000
21 EMMO_mappings 0.252 0.504 0.000
4 CCO 0.252 0.504 0.000
62 SEMMD 0.252 0.504 0.000
19 EMMO_atomistic 0.252 0.504 0.000
3 BWMD-MID 0.252 0.504 0.000
46 OIEmaterials 0.241 0.482 0.000
47 OIEmodels 0.241 0.482 0.000
71 m4i 0.241 0.482 0.000
61 SAREF 0.241 0.482 0.000
45 OIEmanufacturing 0.241 0.482 0.000
65 SP 0.234 0.467 0.000
39 NPO 0.234 0.467 0.000
30 MAMBO 0.234 0.467 0.000
0 AMONTOLOGY 0.234 0.467 0.000
23 EMMO_microstructure 0.234 0.467 0.000
31 MDO 0.234 0.467 0.000
12 DEB 0.234 0.467 0.000
67 UO 0.234 0.467 0.000
64 SO 0.234 0.467 0.000
9 CIF-core 0.222 0.444 0.000
75 mvc 0.222 0.444 0.000
13 DISO 0.222 0.444 0.000
38 MaterialsMine 0.222 0.444 0.000
49 OM 0.222 0.444 0.000
37 MatOnto 0.222 0.444 0.000
41 OA 0.222 0.444 0.000
40 NanoMine 0.222 0.444 0.000
72 mat 0.222 0.444 0.000
26 GPO 0.222 0.444 0.000
35 MSEO 0.222 0.444 0.000
29 LPBFO 0.219 0.438 0.000
34 MOL_TENSILE 0.219 0.438 0.000
82 tribAIn 0.219 0.438 0.000
5 CDCO 0.200 0.400 0.000
1 ASMO 0.200 0.400 0.000
14 DSIM 0.200 0.400 0.000
10 CMSO 0.200 0.400 0.000
68 WILD 0.200 0.400 0.000
55 PODO 0.200 0.400 0.000
76 mwo 0.200 0.400 0.000
24 EXPO 0.200 0.400 0.000
51 P-Plan 0.200 0.400 0.000
7 CHEMINF 0.200 0.400 0.000
53 PLDO 0.200 0.400 0.000
28 LDO 0.200 0.400 0.000
80 periodictable 0.200 0.400 0.000
66 SSN 0.189 0.378 0.000
33 MOL_BRINELL 0.189 0.378 0.000
36 MSLE 0.189 0.378 0.000
32 MDS 0.189 0.378 0.000
56 PRIMA 0.189 0.378 0.000
63 SKOS_MDO 0.189 0.378 0.000
81 ssos 0.189 0.378 0.000
44 OIEcharacterisation-methods 0.189 0.378 0.000
50 OSMO 0.189 0.378 0.000
69 bmo 0.189 0.378 0.000
48 OIEsoftware 0.189 0.378 0.000
11 CSO 0.167 0.333 0.000
73 matinfo 0.167 0.333 0.000
60 QUDV 0.167 0.333 0.000
78 ontorule 0.155 0.311 0.000
74 metal-alloy 0.000 0.000 0.000
43 OEO 0.000 0.000 0.000
17 EMMO_BattINFO 0.000 0.000 0.000
83 vimmp 0.000 0.000 0.000
79 opmw 0.000 0.000 0.000
16 EMMO_BVC 0.000 0.000 0.000
8 CHMO 0.000 0.000 0.048
22 EMMO_mechanical_testing 0.000 0.000 0.000
52 PATO 0.000 0.000 0.095
58 Photovoltaics 0.000 0.000 0.000
70 enanomapper 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 84.0 0.194988 0.082638 0.0 0.189 0.2205 0.24100 0.316
score_dash 84.0 0.384286 0.160919 0.0 0.378 0.4380 0.47075 0.593
score_impact 84.0 0.007226 0.034122 0.0 0.000 0.0000 0.00000 0.262

OBO dependency graph